Technical descriptions of CellProfiler and CellProfiler Analyst software can be found in our papers. For all CellProfiler tutorials, visit our YouTube playlist.

Exploring Image Data


Demonstrates some of CellProfiler Analyst’s data exploration features. [PDF]

Scoring Cell Populations


Provides an example of selecting phenotypes using gating. For applying the machine learning tool to identify a phenotype of interest, watch the tutorial on Classifying Cells with Machine Learning. [PDF]